STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMAG_05851Rtt106 domain-containing protein. (431 aa)    
Predicted Functional Partners:
AMAG_07660
HIT-type domain-containing protein.
    
   0.883
AMAG_09844
HIT-type domain-containing protein.
    
   0.883
AMAG_12701
Uncharacterized protein.
   
 0.834
AMAG_14666
Uncharacterized protein.
   
 0.830
AMAG_06463
WD_REPEATS_REGION domain-containing protein.
    
 
 0.798
AMAG_15494
WD_REPEATS_REGION domain-containing protein.
    
 
 0.798
AMAG_10598
Lysophospholipase.
     
 0.782
AMAG_06713
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 
 0.779
AMAG_01631
Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.
   
 
 0.689
AMAG_04129
Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.
   
 
 0.689
Your Current Organism:
Allomyces macrogynus
NCBI taxonomy Id: 578462
Other names: A. macrogynus ATCC 38327, Allomyces macrogynus ATCC 38327
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.