STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMAG_06280Cyclin ccl1; Belongs to the cyclin family. (430 aa)    
Predicted Functional Partners:
AMAG_15265
CDK-activating kinase assembly factor MAT1.
   
 0.998
AMAG_13950
CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.
    
 0.996
AMAG_06607
Transcription factor tfb4.
   
 0.991
AMAG_12758
Uncharacterized protein.
   
 0.991
AMAG_16551
BSD domain-containing protein.
    
 0.991
AMAG_16768
BSD domain-containing protein.
    
 0.991
AMAG_01316
DNA repair helicase rad25.
    
 0.989
AMAG_05505
DNA repair helicase rad25.
    
 0.989
AMAG_06632
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
   
 0.989
AMAG_04362
TFIIE domain-containing protein.
    
 0.986
Your Current Organism:
Allomyces macrogynus
NCBI taxonomy Id: 578462
Other names: A. macrogynus ATCC 38327, Allomyces macrogynus ATCC 38327
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.