STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMAG_19216Uncharacterized protein. (261 aa)    
Predicted Functional Partners:
AMAG_20289
Proline-tRNA ligase.
  
 
 0.954
AMAG_07589
Proline-tRNA ligase.
  
 
 0.707
AMAG_16960
Proline-tRNA ligase.
  
 
 0.707
AMAG_01337
Glutamine-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.706
AMAG_05531
Glutamine-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.706
AMAG_02668
Brix domain-containing protein.
   
    0.666
AMAG_06367
Brix domain-containing protein.
   
    0.666
AMAG_03618
Uncharacterized protein.
  
  
0.565
AMAG_04938
Uncharacterized protein.
  
  
0.564
AMAG_07210
tRNA pseudouridine synthase A.
  
 
 0.562
Your Current Organism:
Allomyces macrogynus
NCBI taxonomy Id: 578462
Other names: A. macrogynus ATCC 38327, Allomyces macrogynus ATCC 38327
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.