STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMAG_09818Uncharacterized protein. (950 aa)    
Predicted Functional Partners:
AMAG_07575
DNA repair protein.
    
 0.997
AMAG_02578
ERCC4 domain-containing protein.
    
 0.973
AMAG_05059
Uncharacterized protein.
   
 0.973
AMAG_05057
DNA repair protein rad10.
   
 0.973
AMAG_11844
DNA repair protein rad10.
   
 0.973
AMAG_04969
Asparagine-tRNA ligase.
  
 0.970
AMAG_03651
Asparagine-tRNA ligase.
  
 0.970
AMAG_13454
Recombination protein rad52.
   
 0.960
AMAG_13700
Recombination protein rad52, variant.
   
 0.960
AMAG_00289
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.
    
 0.939
Your Current Organism:
Allomyces macrogynus
NCBI taxonomy Id: 578462
Other names: A. macrogynus ATCC 38327, Allomyces macrogynus ATCC 38327
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