STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMAG_11612RluA family pseudouridine synthase. (477 aa)    
Predicted Functional Partners:
AMAG_06137
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.905
AMAG_04685
Ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.888
AMAG_12406
Ribosomal protein L15; Belongs to the universal ribosomal protein uL15 family.
  
   0.886
AMAG_03729
Iojap-like ribosome-associated protein.
  
 
 0.786
AMAG_06871
Iojap-like ribosome-associated protein.
  
 
 0.786
AMAG_16732
TruD family tRNA pseudouridine synthase.
    
 
 0.776
AMAG_16508
TruD family tRNA pseudouridine synthase.
    
 
 0.776
AMAG_11008
tRNA modification GTPase TrmE; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
 
 0.771
AMAG_11618
Small GTP-binding protein domain.
  
 
 0.771
AMAG_09015
Riboflavin-specific deaminase domain-containing protein.
  
 
 0.732
Your Current Organism:
Allomyces macrogynus
NCBI taxonomy Id: 578462
Other names: A. macrogynus ATCC 38327, Allomyces macrogynus ATCC 38327
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