STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALA1-4Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family. (856 aa)    
Predicted Functional Partners:
AMAG_04615
Uncharacterized protein.
    
 0.975
AMAG_07396
Uncharacterized protein.
  
 0.939
AMAG_08296
Uncharacterized protein.
  
 0.939
AMAG_10433
SPOC domain-containing protein.
   
 0.938
AMAG_13036
CS domain-containing protein.
   
 0.926
AMAG_19983
CS domain-containing protein.
   
 0.926
AMAG_04835
HSF_DOMAIN domain-containing protein.
    
 0.913
AMAG_01296
Uncharacterized protein.
    
 0.896
AMAG_03677
Uncharacterized protein.
  
 0.896
AMAG_05485
Uncharacterized protein.
    
 0.896
Your Current Organism:
Allomyces macrogynus
NCBI taxonomy Id: 578462
Other names: A. macrogynus ATCC 38327, Allomyces macrogynus ATCC 38327
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