AMAG_14052 protein (Allomyces macrogynus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMAG_14052

Uncharacterized protein. (952 aa)

Predicted Functional Partners:

AMAG_16659

0.762

AMAG_05016

0.755

AMAG_00642

0.700

AMAG_02153

0.700

AMAG_04347

0.694

AMAG_18191

0.694

AMAG_06165

0.694

AMAG_09208

0.694

AMAG_16262

0.694

AMAG_07565

0.677

Your Current Organism:

Allomyces macrogynus

NCBI taxonomy Id: 578462
Other names: A. macrogynus ATCC 38327, Allomyces macrogynus ATCC 38327

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMAG_00642	AMAG_14052	A0A0L0RWF9	A0A0L0T455	LsmAD domain-containing protein.	Uncharacterized protein.	0.700
AMAG_02153	AMAG_14052	A0A0L0S1B1	A0A0L0T455	LsmAD domain-containing protein.	Uncharacterized protein.	0.700
AMAG_04347	AMAG_05016	A0A0L0S8I8	A0A0L0S797	Thymidylate kinase.	Thymidylate synthase.	0.931
AMAG_04347	AMAG_14052	A0A0L0S8I8	A0A0L0T455	Thymidylate kinase.	Uncharacterized protein.	0.694
AMAG_04347	AMAG_16659	A0A0L0S8I8	A0A0L0TBN2	Thymidylate kinase.	dUTP diphosphatase.	0.919
AMAG_05016	AMAG_04347	A0A0L0S797	A0A0L0S8I8	Thymidylate synthase.	Thymidylate kinase.	0.931
AMAG_05016	AMAG_06165	A0A0L0S797	A0A0L0SEF5	Thymidylate synthase.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.847
AMAG_05016	AMAG_07565	A0A0L0S797	A0A0L0SIY6	Thymidylate synthase.	Dihydrolipoyl dehydrogenase.	0.879
AMAG_05016	AMAG_09208	A0A0L0S797	A0A0L0SP66	Thymidylate synthase.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.847
AMAG_05016	AMAG_14052	A0A0L0S797	A0A0L0T455	Thymidylate synthase.	Uncharacterized protein.	0.755
AMAG_05016	AMAG_16262	A0A0L0S797	A0A0L0TAI2	Thymidylate synthase.	Thymidylate kinase.	0.931
AMAG_05016	AMAG_16659	A0A0L0S797	A0A0L0TBN2	Thymidylate synthase.	dUTP diphosphatase.	0.994
AMAG_05016	AMAG_18191	A0A0L0S797	A0A0L0SAQ0	Thymidylate synthase.	Thymidylate_kin domain-containing protein.	0.931
AMAG_06165	AMAG_05016	A0A0L0SEF5	A0A0L0S797	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Thymidylate synthase.	0.847
AMAG_06165	AMAG_07565	A0A0L0SEF5	A0A0L0SIY6	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Dihydrolipoyl dehydrogenase.	0.884
AMAG_06165	AMAG_14052	A0A0L0SEF5	A0A0L0T455	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Uncharacterized protein.	0.694
AMAG_07565	AMAG_05016	A0A0L0SIY6	A0A0L0S797	Dihydrolipoyl dehydrogenase.	Thymidylate synthase.	0.879
AMAG_07565	AMAG_06165	A0A0L0SIY6	A0A0L0SEF5	Dihydrolipoyl dehydrogenase.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.884
AMAG_07565	AMAG_09208	A0A0L0SIY6	A0A0L0SP66	Dihydrolipoyl dehydrogenase.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.884
AMAG_07565	AMAG_14052	A0A0L0SIY6	A0A0L0T455	Dihydrolipoyl dehydrogenase.	Uncharacterized protein.	0.677