AMAG_15656 protein (Allomyces macrogynus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMAG_15656

Uncharacterized protein. (1493 aa)

Predicted Functional Partners:

KATNAL2

0.635

AMAG_05434

0.635

AMAG_12416

0.557

AMAG_08666

0.555

AMAG_08936

0.555

AMAG_19271

0.555

AMAG_10106

0.555

AMAG_16265

0.555

AMAG_12741

0.547

AMAG_05663

0.543

Your Current Organism:

Allomyces macrogynus

NCBI taxonomy Id: 578462
Other names: A. macrogynus ATCC 38327, Allomyces macrogynus ATCC 38327

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMAG_05434	AMAG_08936	A0A0L0SBZ4	A0A0L0SN07	AAA domain-containing protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.943
AMAG_05434	AMAG_12416	A0A0L0SBZ4	A0A0L0SYQ1	AAA domain-containing protein.	RING-type domain-containing protein.	0.554
AMAG_05434	AMAG_12741	A0A0L0SBZ4	A0A0L0T1E4	AAA domain-containing protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.942
AMAG_05434	AMAG_15656	A0A0L0SBZ4	A0A0L0T9D9	AAA domain-containing protein.	Uncharacterized protein.	0.635
AMAG_05434	AMAG_16265	A0A0L0SBZ4	A0A0L0TAJ1	AAA domain-containing protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.943
AMAG_05434	KATNAL2	A0A0L0SBZ4	A0A0L0RYA6	AAA domain-containing protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.833
AMAG_05663	AMAG_15656	A0A0L0SCU6	A0A0L0T9D9	Uncharacterized protein.	Uncharacterized protein.	0.543
AMAG_08666	AMAG_15656	A0A0L0SM22	A0A0L0T9D9	USP domain-containing protein; Belongs to the peptidase C19 family.	Uncharacterized protein.	0.555
AMAG_08936	AMAG_05434	A0A0L0SN07	A0A0L0SBZ4	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	AAA domain-containing protein.	0.943
AMAG_08936	AMAG_12416	A0A0L0SN07	A0A0L0SYQ1	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	RING-type domain-containing protein.	0.943
AMAG_08936	AMAG_12741	A0A0L0SN07	A0A0L0T1E4	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.992
AMAG_08936	AMAG_15656	A0A0L0SN07	A0A0L0T9D9	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.555
AMAG_08936	KATNAL2	A0A0L0SN07	A0A0L0RYA6	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.943
AMAG_10106	AMAG_15656	A0A0L0SQH6	A0A0L0T9D9	UCH domain-containing protein.	Uncharacterized protein.	0.555
AMAG_12416	AMAG_05434	A0A0L0SYQ1	A0A0L0SBZ4	RING-type domain-containing protein.	AAA domain-containing protein.	0.554
AMAG_12416	AMAG_08936	A0A0L0SYQ1	A0A0L0SN07	RING-type domain-containing protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.943
AMAG_12416	AMAG_12741	A0A0L0SYQ1	A0A0L0T1E4	RING-type domain-containing protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.942
AMAG_12416	AMAG_15656	A0A0L0SYQ1	A0A0L0T9D9	RING-type domain-containing protein.	Uncharacterized protein.	0.557
AMAG_12416	AMAG_16265	A0A0L0SYQ1	A0A0L0TAJ1	RING-type domain-containing protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.943
AMAG_12416	KATNAL2	A0A0L0SYQ1	A0A0L0RYA6	RING-type domain-containing protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.554