AMAG_15749 protein (Allomyces macrogynus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMAG_15749

Xpo1 domain-containing protein. (504 aa)

Predicted Functional Partners:

AMAG_17365

0.967

AMAG_00172

0.895

AMAG_10734

0.895

AMAG_08657

0.851

AMAG_08654

0.851

AMAG_10086

0.851

AMAG_08517

0.835

AMAG_09929

0.835

AMAG_17117

0.835

AMAG_17435

0.835

Your Current Organism:

Allomyces macrogynus

NCBI taxonomy Id: 578462
Other names: A. macrogynus ATCC 38327, Allomyces macrogynus ATCC 38327

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMAG_00172	AMAG_15749	A0A0L0RVR5	A0A0L0TA09	RRM domain-containing protein.	Xpo1 domain-containing protein.	0.895
AMAG_00172	AMAG_17365	A0A0L0RVR5	A0A0L0TEI3	RRM domain-containing protein.	Uncharacterized protein.	0.998
AMAG_08517	AMAG_15749	A0A0L0SLV8	A0A0L0TA09	Phosphoribosylglycinamide formyltransferase.	Xpo1 domain-containing protein.	0.835
AMAG_08517	AMAG_17117	A0A0L0SLV8	A0A0L0TDX6	Phosphoribosylglycinamide formyltransferase.	Phosphoribosylamine-glycine ligase.	0.991
AMAG_08517	AMAG_17435	A0A0L0SLV8	A0A0L0TF79	Phosphoribosylglycinamide formyltransferase.	Phosphoribosylamine-glycine ligase.	0.991
AMAG_08654	AMAG_15749	A0A0L0SM07	A0A0L0TA09	Uncharacterized protein.	Xpo1 domain-containing protein.	0.851
AMAG_08657	AMAG_15749	A0A0L0SLX9	A0A0L0TA09	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Xpo1 domain-containing protein.	0.851
AMAG_09929	AMAG_15749	A0A0L0SQF0	A0A0L0TA09	Phosphoribosylglycinamide formyltransferase.	Xpo1 domain-containing protein.	0.835
AMAG_09929	AMAG_17117	A0A0L0SQF0	A0A0L0TDX6	Phosphoribosylglycinamide formyltransferase.	Phosphoribosylamine-glycine ligase.	0.991
AMAG_09929	AMAG_17435	A0A0L0SQF0	A0A0L0TF79	Phosphoribosylglycinamide formyltransferase.	Phosphoribosylamine-glycine ligase.	0.991
AMAG_10086	AMAG_15749	A0A0L0SQF4	A0A0L0TA09	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Xpo1 domain-containing protein.	0.851
AMAG_10734	AMAG_15749	A0A0L0SRS7	A0A0L0TA09	RRM domain-containing protein.	Xpo1 domain-containing protein.	0.895
AMAG_10734	AMAG_17365	A0A0L0SRS7	A0A0L0TEI3	RRM domain-containing protein.	Uncharacterized protein.	0.998
AMAG_15749	AMAG_00172	A0A0L0TA09	A0A0L0RVR5	Xpo1 domain-containing protein.	RRM domain-containing protein.	0.895
AMAG_15749	AMAG_08517	A0A0L0TA09	A0A0L0SLV8	Xpo1 domain-containing protein.	Phosphoribosylglycinamide formyltransferase.	0.835
AMAG_15749	AMAG_08654	A0A0L0TA09	A0A0L0SM07	Xpo1 domain-containing protein.	Uncharacterized protein.	0.851
AMAG_15749	AMAG_08657	A0A0L0TA09	A0A0L0SLX9	Xpo1 domain-containing protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.851
AMAG_15749	AMAG_09929	A0A0L0TA09	A0A0L0SQF0	Xpo1 domain-containing protein.	Phosphoribosylglycinamide formyltransferase.	0.835
AMAG_15749	AMAG_10086	A0A0L0TA09	A0A0L0SQF4	Xpo1 domain-containing protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.851
AMAG_15749	AMAG_10734	A0A0L0TA09	A0A0L0SRS7	Xpo1 domain-containing protein.	RRM domain-containing protein.	0.895