AMAG_20579 protein (Allomyces macrogynus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMAG_20579

WD_REPEATS_REGION domain-containing protein. (413 aa)

Predicted Functional Partners:

AMAG_18521

0.900

AMAG_18522

0.900

KATNA1

0.900

KATNAL2

0.829

AMAG_05434

0.829

AMAG_17705

0.559

AMAG_02239

0.559

AMAG_04434

0.547

AMAG_05918

0.547

AMAG_06776

0.547

Your Current Organism:

Allomyces macrogynus

NCBI taxonomy Id: 578462
Other names: A. macrogynus ATCC 38327, Allomyces macrogynus ATCC 38327

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMAG_02239	AMAG_05434	A0A0L0S1Z7	A0A0L0SBZ4	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	AAA domain-containing protein.	0.471
AMAG_02239	AMAG_05918	A0A0L0S1Z7	A0A0L0SDM7	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.999
AMAG_02239	AMAG_06776	A0A0L0S1Z7	A0A0L0SF75	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.999
AMAG_02239	AMAG_20579	A0A0L0S1Z7	A0A0L0TDZ1	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	WD_REPEATS_REGION domain-containing protein.	0.559
AMAG_02239	KATNAL2	A0A0L0S1Z7	A0A0L0RYA6	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.469
AMAG_04434	AMAG_20579	A0A0L0S8U5	A0A0L0TDZ1	FGGY-family pentulose kinase.	WD_REPEATS_REGION domain-containing protein.	0.547
AMAG_05434	AMAG_02239	A0A0L0SBZ4	A0A0L0S1Z7	AAA domain-containing protein.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.471
AMAG_05434	AMAG_05918	A0A0L0SBZ4	A0A0L0SDM7	AAA domain-containing protein.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.467
AMAG_05434	AMAG_06776	A0A0L0SBZ4	A0A0L0SF75	AAA domain-containing protein.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.479
AMAG_05434	AMAG_17705	A0A0L0SBZ4	A0A0L0RWP7	AAA domain-containing protein.	26S protease regulatory subunit 8.	0.474
AMAG_05434	AMAG_18521	A0A0L0SBZ4	A0A0L0SD13	AAA domain-containing protein.	ATPase_AAA_core domain-containing protein.	0.508
AMAG_05434	AMAG_18522	A0A0L0SBZ4	A0A0L0SD45	AAA domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.415
AMAG_05434	AMAG_20579	A0A0L0SBZ4	A0A0L0TDZ1	AAA domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.829
AMAG_05434	KATNA1	A0A0L0SBZ4	A0A0L0SXB2	AAA domain-containing protein.	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.	0.473
AMAG_05434	KATNAL2	A0A0L0SBZ4	A0A0L0RYA6	AAA domain-containing protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.833
AMAG_05918	AMAG_02239	A0A0L0SDM7	A0A0L0S1Z7	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.999
AMAG_05918	AMAG_05434	A0A0L0SDM7	A0A0L0SBZ4	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	AAA domain-containing protein.	0.467
AMAG_05918	AMAG_06776	A0A0L0SDM7	A0A0L0SF75	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.999
AMAG_05918	AMAG_17705	A0A0L0SDM7	A0A0L0RWP7	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	26S protease regulatory subunit 8.	0.999
AMAG_05918	AMAG_20579	A0A0L0SDM7	A0A0L0TDZ1	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	WD_REPEATS_REGION domain-containing protein.	0.547