F0ZWV0_DICPU protein (Dictyostelium purpureum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F0ZWV0_DICPU

Uncharacterized protein. (1304 aa)

Predicted Functional Partners:

F0ZB11_DICPU

0.627

F0ZKR4_DICPU

0.561

F0Z619_DICPU

0.533

F0Z894_DICPU

0.533

F0ZS97_DICPU

0.438

F0ZPZ0_DICPU

0.430

F1A4A8_DICPU

0.427

F0Z8B1_DICPU

0.420

F0Z8B2_DICPU

0.420

F0Z8D3_DICPU

0.420

Your Current Organism:

Dictyostelium purpureum

NCBI taxonomy Id: 5786
Other names: D. purpureum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F0Z619_DICPU	F0ZWV0_DICPU	F0Z619	F0ZWV0	Uncharacterized protein.	Uncharacterized protein.	0.533
F0Z894_DICPU	F0ZWV0_DICPU	F0Z894	F0ZWV0	Aldo_ket_red domain-containing protein.	Uncharacterized protein.	0.533
F0Z8B1_DICPU	F0Z8B2_DICPU	F0Z8B1	F0Z8B2	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.801
F0Z8B1_DICPU	F0Z8D3_DICPU	F0Z8B1	F0Z8D3	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.807
F0Z8B1_DICPU	F0ZWV0_DICPU	F0Z8B1	F0ZWV0	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.420
F0Z8B2_DICPU	F0Z8B1_DICPU	F0Z8B2	F0Z8B1	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.801
F0Z8B2_DICPU	F0Z8D3_DICPU	F0Z8B2	F0Z8D3	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.807
F0Z8B2_DICPU	F0ZWV0_DICPU	F0Z8B2	F0ZWV0	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.420
F0Z8D3_DICPU	F0Z8B1_DICPU	F0Z8D3	F0Z8B1	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.807
F0Z8D3_DICPU	F0Z8B2_DICPU	F0Z8D3	F0Z8B2	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.807
F0Z8D3_DICPU	F0ZWV0_DICPU	F0Z8D3	F0ZWV0	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.420
F0ZB11_DICPU	F0ZPZ0_DICPU	F0ZB11	F0ZPZ0	Uncharacterized protein.	Glutathione synthetase.	0.993
F0ZB11_DICPU	F0ZWV0_DICPU	F0ZB11	F0ZWV0	Uncharacterized protein.	Uncharacterized protein.	0.627
F0ZKR4_DICPU	F0ZWV0_DICPU	F0ZKR4	F0ZWV0	Beta-lactamase domain-containing protein.	Uncharacterized protein.	0.561
F0ZPZ0_DICPU	F0ZB11_DICPU	F0ZPZ0	F0ZB11	Glutathione synthetase.	Uncharacterized protein.	0.993
F0ZPZ0_DICPU	F0ZWV0_DICPU	F0ZPZ0	F0ZWV0	Glutathione synthetase.	Uncharacterized protein.	0.430
F0ZS97_DICPU	F0ZWV0_DICPU	F0ZS97	F0ZWV0	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	Uncharacterized protein.	0.438
F0ZWV0_DICPU	F0Z619_DICPU	F0ZWV0	F0Z619	Uncharacterized protein.	Uncharacterized protein.	0.533
F0ZWV0_DICPU	F0Z894_DICPU	F0ZWV0	F0Z894	Uncharacterized protein.	Aldo_ket_red domain-containing protein.	0.533
F0ZWV0_DICPU	F0Z8B1_DICPU	F0ZWV0	F0Z8B1	Uncharacterized protein.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.420