STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM96336.1Diguanylate cyclase/phosphodiesterase. (787 aa)    
Predicted Functional Partners:
SFN05393.1
Type IV pilus assembly protein PilZ.
    
   0.984
SFN31993.1
Hpt sensor hybrid histidine kinase.
 
 0.963
SFN09548.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
  
 0.960
SFN05586.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
 
 0.949
SFN51254.1
Two-component system, sensor histidine kinase RpfC.
 
 0.948
SFN35821.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.935
SFN01632.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.926
SFM99720.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.909
SFN05448.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.899
SFM95658.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
0.896
Your Current Organism:
Dokdonella immobilis
NCBI taxonomy Id: 578942
Other names: CGMCC 1.7659, D. immobilis, Dokdonella immobilis Liu et al. 2013, Dokdonella sp. LM2-5, JCM 15763, strain LM2-5
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