STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN19779.1Amino acid/polyamine/organocation transporter, APC superfamily. (437 aa)    
Predicted Functional Partners:
SFN19770.1
Dimethylamine/trimethylamine dehydrogenase.
   
 
 0.803
SFN10159.1
Alpha-glucosidase.
    
  0.704
SFN10258.1
Cyclomaltodextrin glucanotransferase.
    
  0.704
SFN09837.1
Glycosidase.
    
  0.704
SFN19731.1
Glycosidase; Belongs to the glycosyl hydrolase 13 family.
    
  0.704
nadE-2
NAD+ synthase/NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.631
SFN19801.1
Choline monooxygenase.
       0.566
SFN19789.1
Imidazolonepropionase.
       0.534
SFN06145.1
Chorismate mutase.
   
 0.476
SFN19811.1
L-aminopeptidase DmpA. Serine peptidase. MEROPS family S58.
       0.418
Your Current Organism:
Dokdonella immobilis
NCBI taxonomy Id: 578942
Other names: CGMCC 1.7659, D. immobilis, Dokdonella immobilis Liu et al. 2013, Dokdonella sp. LM2-5, JCM 15763, strain LM2-5
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