STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN19789.1Imidazolonepropionase. (451 aa)    
Predicted Functional Partners:
SFN19801.1
Choline monooxygenase.
 
     0.804
SFN19811.1
L-aminopeptidase DmpA. Serine peptidase. MEROPS family S58.
 
     0.659
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
 
 0.581
SFN58082.1
Amidohydrolase family protein.
  
     0.561
SFN19779.1
Amino acid/polyamine/organocation transporter, APC superfamily.
       0.534
SFN19770.1
Dimethylamine/trimethylamine dehydrogenase.
       0.530
SFN20038.1
Histidine ammonia-lyase.
  
  
 0.510
SFN59268.1
Protein of unknown function.
  
     0.490
SFN51993.1
Hypothetical protein.
  
     0.418
Your Current Organism:
Dokdonella immobilis
NCBI taxonomy Id: 578942
Other names: CGMCC 1.7659, D. immobilis, Dokdonella immobilis Liu et al. 2013, Dokdonella sp. LM2-5, JCM 15763, strain LM2-5
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