SFN30743.1 protein (Dokdonella immobilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFN30743.1

Protein of unknown function. (93 aa)

Predicted Functional Partners:

murB

0.784

pyrD

0.783

SFN23505.1

0.729

SFN36874.1

0.643

SFN30755.1

0.597

SFN11384.1

0.580

SFN32626.1

0.580

SFN14698.1

0.569

SFN33085.1

0.531

SFN42016.1

0.500

Your Current Organism:

Dokdonella immobilis

NCBI taxonomy Id: 578942
Other names: CGMCC 1.7659, D. immobilis, Dokdonella immobilis Liu et al. 2013, Dokdonella sp. LM2-5, JCM 15763, strain LM2-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFN11384.1	SFN14698.1	SAMN05216289_104187	SAMN05216289_105158	WGR domain-containing protein, predicted DNA-binding domain in MolR.	ABC-2 type transport system permease protein.	0.626
SFN11384.1	SFN23505.1	SAMN05216289_104187	SAMN05216289_10930	WGR domain-containing protein, predicted DNA-binding domain in MolR.	Sensor protein.	0.723
SFN11384.1	SFN30743.1	SAMN05216289_104187	SAMN05216289_11333	WGR domain-containing protein, predicted DNA-binding domain in MolR.	Protein of unknown function.	0.580
SFN11384.1	SFN32626.1	SAMN05216289_104187	SAMN05216289_11479	WGR domain-containing protein, predicted DNA-binding domain in MolR.	PilZ domain-containing protein.	0.613
SFN11384.1	SFN33085.1	SAMN05216289_104187	SAMN05216289_1151	WGR domain-containing protein, predicted DNA-binding domain in MolR.	Protein of unknown function.	0.601
SFN11384.1	SFN36874.1	SAMN05216289_104187	SAMN05216289_11737	WGR domain-containing protein, predicted DNA-binding domain in MolR.	Hypothetical protein.	0.717
SFN11384.1	SFN42016.1	SAMN05216289_104187	SAMN05216289_12044	WGR domain-containing protein, predicted DNA-binding domain in MolR.	Hypothetical protein.	0.571
SFN14698.1	SFN11384.1	SAMN05216289_105158	SAMN05216289_104187	ABC-2 type transport system permease protein.	WGR domain-containing protein, predicted DNA-binding domain in MolR.	0.626
SFN14698.1	SFN23505.1	SAMN05216289_105158	SAMN05216289_10930	ABC-2 type transport system permease protein.	Sensor protein.	0.610
SFN14698.1	SFN30743.1	SAMN05216289_105158	SAMN05216289_11333	ABC-2 type transport system permease protein.	Protein of unknown function.	0.569
SFN14698.1	SFN32626.1	SAMN05216289_105158	SAMN05216289_11479	ABC-2 type transport system permease protein.	PilZ domain-containing protein.	0.540
SFN14698.1	SFN33085.1	SAMN05216289_105158	SAMN05216289_1151	ABC-2 type transport system permease protein.	Protein of unknown function.	0.431
SFN14698.1	SFN36874.1	SAMN05216289_105158	SAMN05216289_11737	ABC-2 type transport system permease protein.	Hypothetical protein.	0.726
SFN14698.1	SFN42016.1	SAMN05216289_105158	SAMN05216289_12044	ABC-2 type transport system permease protein.	Hypothetical protein.	0.698
SFN23505.1	SFN11384.1	SAMN05216289_10930	SAMN05216289_104187	Sensor protein.	WGR domain-containing protein, predicted DNA-binding domain in MolR.	0.723
SFN23505.1	SFN14698.1	SAMN05216289_10930	SAMN05216289_105158	Sensor protein.	ABC-2 type transport system permease protein.	0.610
SFN23505.1	SFN30743.1	SAMN05216289_10930	SAMN05216289_11333	Sensor protein.	Protein of unknown function.	0.729
SFN23505.1	SFN32626.1	SAMN05216289_10930	SAMN05216289_11479	Sensor protein.	PilZ domain-containing protein.	0.627
SFN23505.1	SFN33085.1	SAMN05216289_10930	SAMN05216289_1151	Sensor protein.	Protein of unknown function.	0.447
SFN23505.1	SFN36874.1	SAMN05216289_10930	SAMN05216289_11737	Sensor protein.	Hypothetical protein.	0.704