Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFM96745.1 | SFN31175.1 | SAMN05216289_101160 | SAMN05216289_11367 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | DNA helicase-4. | 0.784 |
SFM96745.1 | SFN44713.1 | SAMN05216289_101160 | SAMN05216289_12221 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | ATP-dependent DNA helicase RecQ. | 0.530 |
SFN00214.1 | SFN27910.1 | SAMN05216289_10257 | SAMN05216289_11143 | O-antigen ligase. | Hypothetical protein. | 0.486 |
SFN00214.1 | SFN31175.1 | SAMN05216289_10257 | SAMN05216289_11367 | O-antigen ligase. | DNA helicase-4. | 0.651 |
SFN02655.1 | SFN31175.1 | SAMN05216289_102253 | SAMN05216289_11367 | Fe-S-cluster-containing dehydrogenase component. | DNA helicase-4. | 0.748 |
SFN27910.1 | SFN00214.1 | SAMN05216289_11143 | SAMN05216289_10257 | Hypothetical protein. | O-antigen ligase. | 0.486 |
SFN27910.1 | SFN31175.1 | SAMN05216289_11143 | SAMN05216289_11367 | Hypothetical protein. | DNA helicase-4. | 0.610 |
SFN30992.1 | SFN31175.1 | SAMN05216289_11353 | SAMN05216289_11367 | MobA/MobL family protein. | DNA helicase-4. | 0.735 |
SFN30992.1 | SFN44713.1 | SAMN05216289_11353 | SAMN05216289_12221 | MobA/MobL family protein. | ATP-dependent DNA helicase RecQ. | 0.589 |
SFN30992.1 | recC | SAMN05216289_11353 | SAMN05216289_13728 | MobA/MobL family protein. | DNA helicase/exodeoxyribonuclease V, gamma subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recomb [...] | 0.921 |
SFN31175.1 | SFM96745.1 | SAMN05216289_11367 | SAMN05216289_101160 | DNA helicase-4. | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.784 |
SFN31175.1 | SFN00214.1 | SAMN05216289_11367 | SAMN05216289_10257 | DNA helicase-4. | O-antigen ligase. | 0.651 |
SFN31175.1 | SFN02655.1 | SAMN05216289_11367 | SAMN05216289_102253 | DNA helicase-4. | Fe-S-cluster-containing dehydrogenase component. | 0.748 |
SFN31175.1 | SFN27910.1 | SAMN05216289_11367 | SAMN05216289_11143 | DNA helicase-4. | Hypothetical protein. | 0.610 |
SFN31175.1 | SFN30992.1 | SAMN05216289_11367 | SAMN05216289_11353 | DNA helicase-4. | MobA/MobL family protein. | 0.735 |
SFN31175.1 | SFN44713.1 | SAMN05216289_11367 | SAMN05216289_12221 | DNA helicase-4. | ATP-dependent DNA helicase RecQ. | 0.748 |
SFN31175.1 | leuS | SAMN05216289_11367 | SAMN05216289_11757 | DNA helicase-4. | leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.742 |
SFN31175.1 | ligA | SAMN05216289_11367 | SAMN05216289_103131 | DNA helicase-4. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.719 |
SFN31175.1 | recC | SAMN05216289_11367 | SAMN05216289_13728 | DNA helicase-4. | DNA helicase/exodeoxyribonuclease V, gamma subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recomb [...] | 0.872 |
SFN31175.1 | recD | SAMN05216289_11367 | SAMN05216289_13726 | DNA helicase-4. | DNA helicase/exodeoxyribonuclease V, alpha subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recomb [...] | 0.735 |
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