STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN37353.1Catechol 2,3-dioxygenase. (129 aa)    
Predicted Functional Partners:
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
 0.778
SFN37334.1
Acetyltransferase (GNAT) domain-containing protein.
       0.697
SFN26366.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.648
SFN50046.1
Protein of unknown function.
  
     0.628
SFN38486.1
Protein of unknown function.
  
     0.572
SFN37320.1
Mannose-6-phosphate isomerase, cupin superfamily.
       0.569
SFN04654.1
Nitroreductase.
  
    0.540
SFN60703.1
Protein of unknown function.
  
     0.515
SFM99672.1
TolB amino-terminal domain-containing protein.
  
     0.453
SFN33445.1
TolB amino-terminal domain-containing protein.
  
     0.452
Your Current Organism:
Dokdonella immobilis
NCBI taxonomy Id: 578942
Other names: CGMCC 1.7659, D. immobilis, Dokdonella immobilis Liu et al. 2013, Dokdonella sp. LM2-5, JCM 15763, strain LM2-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.