STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN39278.1Short-chain dehydrogenase. (243 aa)    
Predicted Functional Partners:
SFN39238.1
decaprenylphospho-beta-D-ribofuranose 2-oxidase.
 
   
 0.915
SFM99925.1
Amino acid adenylation domain-containing protein.
 
 
 0.780
SFN39223.1
Kef-type potassium/proton antiporter, CPA2 family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
       0.774
SFM99915.1
Amino acid adenylation domain-containing protein.
   
 0.731
SFN67496.1
FabA-like domain-containing protein.
     
 0.633
SFN60811.1
3-oxoacid CoA-transferase; CoA transferase having broad substrate specificity for short- chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons. Belongs to the 3-oxoacid CoA-transferase family.
     
 0.626
SFN01439.1
4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
 
  
 0.582
SFN39208.1
Hypothetical protein.
       0.521
Your Current Organism:
Dokdonella immobilis
NCBI taxonomy Id: 578942
Other names: CGMCC 1.7659, D. immobilis, Dokdonella immobilis Liu et al. 2013, Dokdonella sp. LM2-5, JCM 15763, strain LM2-5
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.