STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN39511.1Membrane associated serine protease, rhomboid family. (264 aa)    
Predicted Functional Partners:
SFN13952.1
N-acetylmuramoyl-L-alanine amidase.
  
   0.532
SFN02553.1
Hypothetical protein.
    
  0.468
SFN10301.1
Regulator of protease activity HflC, stomatin/prohibitin superfamily.
    
  0.468
SFN15350.1
Protease FtsH subunit HflK; HflC and HflK could encode or regulate a protease.
    
  0.468
SFN15366.1
Membrane protease subunit HflC; HflC and HflK could regulate a protease.
    
  0.468
SFN26086.1
SPFH domain / Band 7 family protein.
    
  0.468
SFN43157.1
SPFH domain, Band 7 family protein.
    
  0.468
SFN44770.1
Protease FtsH subunit HflC.
    
  0.468
ftsH
Membrane protease FtsH catalytic subunit; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
     
 0.442
ftsH-2
Cell division protease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
     
 0.442
Your Current Organism:
Dokdonella immobilis
NCBI taxonomy Id: 578942
Other names: CGMCC 1.7659, D. immobilis, Dokdonella immobilis Liu et al. 2013, Dokdonella sp. LM2-5, JCM 15763, strain LM2-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.