STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN45070.1Rubrerythrin. (140 aa)    
Predicted Functional Partners:
SFN45087.1
Fe-S oxidoreductase.
 
  
 0.895
SFN45098.1
Protein of unknown function.
 
     0.888
SFN45036.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
  
  
 0.607
SFN46387.1
Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.588
SFN08671.1
Rubredoxin.
  
  
 0.545
SFN63541.1
Indolepyruvate ferredoxin oxidoreductase.
  
 
 0.498
SFN45052.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.497
SFN02806.1
Formate dehydrogenase alpha subunit.
    
 0.430
SFN16630.1
Hypothetical protein.
  
  
 0.420
SFN02693.1
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.412
Your Current Organism:
Dokdonella immobilis
NCBI taxonomy Id: 578942
Other names: CGMCC 1.7659, D. immobilis, Dokdonella immobilis Liu et al. 2013, Dokdonella sp. LM2-5, JCM 15763, strain LM2-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.