STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN57375.1Membrane-bound lytic murein transglycosylase D. (499 aa)    
Predicted Functional Partners:
SFN57366.1
Hypothetical protein.
       0.572
SFN02792.1
Peptidoglycan-associated lipoprotein.
  
     0.521
SFN13952.1
N-acetylmuramoyl-L-alanine amidase.
  
 
 0.521
SFN13480.1
OmpA-OmpF porin, OOP family.
  
     0.514
SFN28989.1
Putative peptide modification system cyclase.
  
     0.471
greB
Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.
 
     0.452
SFN22280.1
Phosphatidylglycerophosphatase C.
  
 
   0.439
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
     0.421
SFN38798.1
Outer membrane transport energization protein ExbB.
  
     0.419
SFN62030.1
Transglycosylase SLT domain-containing protein.
  
     0.418
Your Current Organism:
Dokdonella immobilis
NCBI taxonomy Id: 578942
Other names: CGMCC 1.7659, D. immobilis, Dokdonella immobilis Liu et al. 2013, Dokdonella sp. LM2-5, JCM 15763, strain LM2-5
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