Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFN36446.1 | SFN69046.1 | SAMN05216289_1171 | SAMN05216289_14914 | Elongation factor Tu. | Elongation factor Tu. | 0.975 |
SFN36446.1 | rplA | SAMN05216289_1171 | SAMN05216289_1499 | Elongation factor Tu. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.951 |
SFN36446.1 | rplB | SAMN05216289_1171 | SAMN05216289_1076 | Elongation factor Tu. | LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.951 |
SFN36446.1 | rplC | SAMN05216289_1171 | SAMN05216289_1073 | Elongation factor Tu. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.952 |
SFN36446.1 | rplF | SAMN05216289_1171 | SAMN05216289_10718 | Elongation factor Tu. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.949 |
SFN36446.1 | rplK | SAMN05216289_1171 | SAMN05216289_14910 | Elongation factor Tu. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.954 |
SFN36446.1 | rpsD | SAMN05216289_1171 | SAMN05216289_10726 | Elongation factor Tu. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.952 |
SFN36446.1 | rpsG | SAMN05216289_1171 | SAMN05216289_1493 | Elongation factor Tu. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.951 |
SFN36446.1 | tsf | SAMN05216289_1171 | SAMN05216289_12530 | Elongation factor Tu. | Translation elongation factor Ts (EF-Ts); Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.979 |
SFN68846.1 | SFN69046.1 | SAMN05216289_1491 | SAMN05216289_14914 | Elongation factor Tu. | Elongation factor Tu. | 0.977 |
SFN68846.1 | rplA | SAMN05216289_1491 | SAMN05216289_1499 | Elongation factor Tu. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.956 |
SFN68846.1 | rplB | SAMN05216289_1491 | SAMN05216289_1076 | Elongation factor Tu. | LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.951 |
SFN68846.1 | rplC | SAMN05216289_1491 | SAMN05216289_1073 | Elongation factor Tu. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.952 |
SFN68846.1 | rplF | SAMN05216289_1491 | SAMN05216289_10718 | Elongation factor Tu. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.949 |
SFN68846.1 | rplK | SAMN05216289_1491 | SAMN05216289_14910 | Elongation factor Tu. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.959 |
SFN68846.1 | rpsD | SAMN05216289_1491 | SAMN05216289_10726 | Elongation factor Tu. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.952 |
SFN68846.1 | rpsG | SAMN05216289_1491 | SAMN05216289_1493 | Elongation factor Tu. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.970 |
SFN68846.1 | tsf | SAMN05216289_1491 | SAMN05216289_12530 | Elongation factor Tu. | Translation elongation factor Ts (EF-Ts); Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.979 |
SFN69046.1 | SFN36446.1 | SAMN05216289_14914 | SAMN05216289_1171 | Elongation factor Tu. | Elongation factor Tu. | 0.975 |
SFN69046.1 | SFN68846.1 | SAMN05216289_14914 | SAMN05216289_1491 | Elongation factor Tu. | Elongation factor Tu. | 0.977 |
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