SHI40107.1 protein (Mesonia phycicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHI40107.1

Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains. (253 aa)

Predicted Functional Partners:

SHI78230.1

0.726

SHI89467.1

0.704

SHJ05691.1

0.685

SHI34838.1

0.679

SHJ10994.1

0.653

SHI40078.1

0.631

SHI96891.1

0.595

SHI40126.1

0.594

SHI85733.1

0.592

SHI35235.1

0.578

Your Current Organism:

Mesonia phycicola

NCBI taxonomy Id: 579105
Other names: DSM 21425, KCTC 22373, M. phycicola, Mesonia phycicola Kang and Lee 2010, Mesonia sp. MDSW-25, strain MDSW-25

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHI34838.1	SHI40107.1	SAMN04488096_101229	SAMN04488096_101451	Hypothetical protein.	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.	0.679
SHI34838.1	SHI96891.1	SAMN04488096_101229	SAMN04488096_106135	Hypothetical protein.	Hypothetical protein.	0.634
SHI35235.1	SHI40107.1	SAMN04488096_101245	SAMN04488096_101451	Hypothetical protein.	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.	0.578
SHI35235.1	SHI78230.1	SAMN04488096_101245	SAMN04488096_104245	Hypothetical protein.	Hypothetical protein.	0.404
SHI35235.1	SHI89467.1	SAMN04488096_101245	SAMN04488096_105284	Hypothetical protein.	Hypothetical protein.	0.710
SHI35235.1	SHJ10994.1	SAMN04488096_101245	SAMN04488096_108107	Hypothetical protein.	Hypothetical protein.	0.521
SHI40078.1	SHI40107.1	SAMN04488096_101450	SAMN04488096_101451	Tetratricopeptide repeat-containing protein.	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.	0.631
SHI40078.1	SHI40126.1	SAMN04488096_101450	SAMN04488096_101452	Tetratricopeptide repeat-containing protein.	Multidrug resistance protein.	0.492
SHI40107.1	SHI34838.1	SAMN04488096_101451	SAMN04488096_101229	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.	Hypothetical protein.	0.679
SHI40107.1	SHI35235.1	SAMN04488096_101451	SAMN04488096_101245	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.	Hypothetical protein.	0.578
SHI40107.1	SHI40078.1	SAMN04488096_101451	SAMN04488096_101450	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.	Tetratricopeptide repeat-containing protein.	0.631
SHI40107.1	SHI40126.1	SAMN04488096_101451	SAMN04488096_101452	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.	Multidrug resistance protein.	0.594
SHI40107.1	SHI78230.1	SAMN04488096_101451	SAMN04488096_104245	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.	Hypothetical protein.	0.726
SHI40107.1	SHI85733.1	SAMN04488096_101451	SAMN04488096_105121	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.	Hypothetical protein.	0.592
SHI40107.1	SHI89467.1	SAMN04488096_101451	SAMN04488096_105284	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.	Hypothetical protein.	0.704
SHI40107.1	SHI96891.1	SAMN04488096_101451	SAMN04488096_106135	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.	Hypothetical protein.	0.595
SHI40107.1	SHJ05691.1	SAMN04488096_101451	SAMN04488096_107170	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.	Selenocysteine lyase/Cysteine desulfurase.	0.685
SHI40107.1	SHJ10994.1	SAMN04488096_101451	SAMN04488096_108107	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.	Hypothetical protein.	0.653
SHI40126.1	SHI40078.1	SAMN04488096_101452	SAMN04488096_101450	Multidrug resistance protein.	Tetratricopeptide repeat-containing protein.	0.492
SHI40126.1	SHI40107.1	SAMN04488096_101452	SAMN04488096_101451	Multidrug resistance protein.	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.	0.594