STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI47316.1TonB-linked outer membrane protein, SusC/RagA family. (992 aa)    
Predicted Functional Partners:
SHI47337.1
RagB/SusD domain-containing protein.
 
 
   0.961
SHI47394.1
Methylamine utilisation protein MauE.
  
     0.773
SHI47357.1
Predicted Zn-dependent peptidase.
 
    0.764
SHI41712.1
Starch-binding associating with outer membrane.
 
 
   0.722
SHI47467.1
RteC protein.
  
     0.695
SHI96790.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.688
SHI47451.1
7-keto-8-aminopelargonate synthetase.
  
     0.677
SHJ15870.1
RagB/SusD domain-containing protein.
 
   0.674
SHI47653.1
Protein of unknown function.
  
     0.666
SHI47560.1
Bacteroides conjugation system ATPase, TraG family.
  
     0.624
Your Current Organism:
Mesonia phycicola
NCBI taxonomy Id: 579105
Other names: DSM 21425, KCTC 22373, M. phycicola, Mesonia phycicola Kang and Lee 2010, Mesonia sp. MDSW-25, strain MDSW-25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.