STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI83515.1Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily. (300 aa)    
Predicted Functional Partners:
SHI31368.1
Phytoene/squalene synthetase.
  
 0.791
SHI47782.1
Protein of unknown function.
   
 0.734
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
   
 0.668
SHI89179.1
Hypothetical protein; Belongs to the cytochrome P450 family.
   
 0.613
SHJ14792.1
Nucleoside-diphosphate-sugar epimerase.
  
  0.553
SHI35997.1
linoleoyl-CoA desaturase.
 
 
 0.494
SHI55416.1
Lipid kinase, YegS/Rv2252/BmrU family.
   
 0.489
SHI37969.1
UDP-N-acetylglucosamine 4-epimerase.
   
  0.450
SHI38452.1
Nucleoside-diphosphate-sugar epimerase.
   
  0.450
SHI66870.1
dTDP-glucose 4,6-dehydratase.
   
  0.450
Your Current Organism:
Mesonia phycicola
NCBI taxonomy Id: 579105
Other names: DSM 21425, KCTC 22373, M. phycicola, Mesonia phycicola Kang and Lee 2010, Mesonia sp. MDSW-25, strain MDSW-25
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