STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI93943.1Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (506 aa)    
Predicted Functional Partners:
SHI93918.1
Protein of unknown function.
 
 
  0.945
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
   
  0.891
SHJ16664.1
Glutamate synthase (NADH) large subunit.
  
 
 0.883
SHI89224.1
Allosteric NADP-dependent malic enzyme.
  
 
 0.647
SHI93973.1
Transcriptional regulator, AraC family.
 
     0.629
SHI40839.1
Citrate synthase; Belongs to the citrate synthase family.
   
 0.560
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
   
 
 0.551
SHI87195.1
Succinate dehydrogenase subunit A.
   
 0.525
SHI48101.1
FAD/FMN-containing dehydrogenase.
  
 
 0.521
SHI39835.1
propionyl-CoA synthetase.
   
  0.519
Your Current Organism:
Mesonia phycicola
NCBI taxonomy Id: 579105
Other names: DSM 21425, KCTC 22373, M. phycicola, Mesonia phycicola Kang and Lee 2010, Mesonia sp. MDSW-25, strain MDSW-25
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