STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ15967.1Iron complex outermembrane recepter protein. (807 aa)    
Predicted Functional Partners:
SHJ15942.1
Uncharacterized iron-regulated membrane protein.
 
  
 0.926
SHI40572.1
FecR family protein.
  
 
 0.871
infB
Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
 
 0.616
SHI89343.1
Protein TonB.
   
 
 0.613
SHJ05751.1
TonB protein C-terminal.
   
 
 0.613
SHJ16818.1
Outer membrane transport energization protein TonB.
   
 
 0.613
SHI77876.1
Isochorismate synthase.
   
  
 0.528
SHJ15987.1
Putative ABC transport system permease protein.
       0.451
SHJ20043.1
Hypothetical protein.
  
     0.442
SHI72768.1
Transcriptional regulator, AraC family.
  
     0.439
Your Current Organism:
Mesonia phycicola
NCBI taxonomy Id: 579105
Other names: DSM 21425, KCTC 22373, M. phycicola, Mesonia phycicola Kang and Lee 2010, Mesonia sp. MDSW-25, strain MDSW-25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.