STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ16073.1Rod shape-determining protein MreD. (168 aa)    
Predicted Functional Partners:
SHJ16098.1
Penicillin-binding protein 2.
 
     0.845
SHJ16051.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
  
    0.814
SHJ16114.1
Rod shape determining protein RodA; Belongs to the SEDS family.
  
    0.812
SHJ16025.1
Rod shape-determining protein MreB.
       0.781
SHI90465.1
Protein involved in gliding motility GldM.
  
     0.678
SHI83411.1
Protein involved in gliding motility GldH.
  
     0.671
purH
Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase.
       0.653
SHI75621.1
Protein of unknown function.
  
     0.632
SHI89265.1
Protein involved in gliding motility SprA.
  
     0.626
SHI47833.1
Family of unknown function.
  
     0.602
Your Current Organism:
Mesonia phycicola
NCBI taxonomy Id: 579105
Other names: DSM 21425, KCTC 22373, M. phycicola, Mesonia phycicola Kang and Lee 2010, Mesonia sp. MDSW-25, strain MDSW-25
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