STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
cas1CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (322 aa)    
Predicted Functional Partners:
ACX71876.1
CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.
 
 
 
 0.992
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
 
 0.980
ACX71882.1
CRISPR-associated protein Cas6; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).
 
   
 0.891
ACX71879.1
TIGRFAM: CRISPR-associated protein Csc2; KEGG: pto:PTO0007 hypothetical protein.
 
   
 0.791
ACX71877.1
CRISPR-associated helicase, Cyano-type; KEGG: mar:MAE_30640 DEAD/DEAH box helicase-like protein; TIGRFAM: CRISPR-associated helicase, Cyano-type; PFAM: DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase.
 
     0.773
ACX71881.1
Transcriptional regulator, ArsR family; TIGRFAM: CRISPR locus-related DNA-binding protein; PFAM: regulatory protein ArsR; KEGG: mja:MJ0379 hypothetical protein.
     
 0.637
ACX71880.1
KEGG: pto:PTO0008 hypothetical protein.
       0.627
ACX71878.1
TIGRFAM: CRISPR-associated protein Csc1; KEGG: pto:PTO0006 hypothetical protein.
       0.508
ACX73078.1
TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: ton:TON_0893 hypothetical protein.
 
  
 0.423
ACX73005.1
TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: mfe:Mefer_0971 CRISPR-associated protein, Csm1 family.
 
  
 0.417
Your Current Organism:
Methanocaldococcus vulcanius
NCBI taxonomy Id: 579137
Other names: M. vulcanius M7, Methanocaldococcus vulcanius M7, Methanocaldococcus vulcanius str. M7, Methanocaldococcus vulcanius strain M7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.