Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACX71896.1KEGG: mja:MJ0786 hypothetical protein. (183 aa)    
Predicted Functional Partners:
ACX71894.1
PFAM: Uncharacterised conserved protein UCP019375; KEGG: mja:MJ0787 hypothetical protein.
       0.851
ACX71898.1
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mja:MJ0785 biotin synthase.
       0.800
ACX71897.1
KEGG: mja:MJ0795.1 hypothetical protein.
       0.792
ACX71895.1
KEGG: pab:PAB0900 hypothetical protein.
       0.773
hmd
Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase; Catalyzes the reversible reduction of methenyl-H(4)MPT(+) to methylene-H(4)MPT.
       0.602
ACX71893.1
KEGG: mja:MJ0789 hypothetical protein.
       0.579
ACX72912.1
PFAM: chromosome segregation and condensation protein ScpA; KEGG: mfe:Mefer_0285 chromosome segregation and condensation protein ScpA.
       0.481
Your Current Organism:
Methanocaldococcus vulcanius
NCBI taxonomy Id: 579137
Other names: M. vulcanius M7, Methanocaldococcus vulcanius M7, Methanocaldococcus vulcanius str. M7, Methanocaldococcus vulcanius strain M7
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