STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACX72214.1KEGG: mfe:Mefer_0611 subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain protein-like protein. (197 aa)    
Predicted Functional Partners:
ACX72215.1
PFAM: DNA-binding TFAR19-related protein; KEGG: mfe:Mefer_0610 DNA-binding TFAR19-related protein; Belongs to the PDCD5 family.
  
    0.996
rps19e
Ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
  
    0.988
cmk
TIGRFAM: cytidylate kinase; KEGG: mja:MJ0656 cytidylate kinase.
  
    0.916
rpl34e
PFAM: Ribosomal protein L34e; KEGG: mja:MJ0655 50S ribosomal protein L34e; Belongs to the eukaryotic ribosomal protein eL34 family.
  
    0.905
ACX72415.1
KEGG: mja:MJ0981 hypothetical protein.
  
    0.903
nusA
NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.
   
    0.897
rpl39e
PFAM: Ribosomal protein L39e; KEGG: mja:MJ0689 50S ribosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family.
  
    0.895
rps7
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.
   
    0.895
rpl4
50S ribosomal protein L4P; Forms part of the polypeptide exit tunnel.
   
    0.895
rps17
Ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
    0.893
Your Current Organism:
Methanocaldococcus vulcanius
NCBI taxonomy Id: 579137
Other names: M. vulcanius M7, Methanocaldococcus vulcanius M7, Methanocaldococcus vulcanius str. M7, Methanocaldococcus vulcanius strain M7
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