STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACX72215.1PFAM: DNA-binding TFAR19-related protein; KEGG: mfe:Mefer_0610 DNA-binding TFAR19-related protein; Belongs to the PDCD5 family. (122 aa)    
Predicted Functional Partners:
ACX72214.1
KEGG: mfe:Mefer_0611 subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain protein-like protein.
  
    0.996
rps19e
Ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
 
    0.992
rpl39e
PFAM: Ribosomal protein L39e; KEGG: mja:MJ0689 50S ribosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family.
  
    0.967
rpl11
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.
  
    0.942
rpl1
Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.
  
  
 0.942
rpl10
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
  
 0.927
nusA
NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.
  
    0.926
rpl29
TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: mja:MJ0462 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
    0.924
rpl4
50S ribosomal protein L4P; Forms part of the polypeptide exit tunnel.
  
    0.915
rpl14
50S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
  
 0.914
Your Current Organism:
Methanocaldococcus vulcanius
NCBI taxonomy Id: 579137
Other names: M. vulcanius M7, Methanocaldococcus vulcanius M7, Methanocaldococcus vulcanius str. M7, Methanocaldococcus vulcanius strain M7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.