STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACX72224.1KEGG: mfe:Mefer_0724 hypothetical protein. (158 aa)    
Predicted Functional Partners:
ACX72225.1
PFAM: Protein of unknown function DUF1188; KEGG: mja:MJ0489 hypothetical protein.
  
  
 0.983
pheS
KEGG: mja:MJ0487 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 2 subfamily.
  
    0.705
ACX71898.1
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mja:MJ0785 biotin synthase.
     
 0.634
ACX72765.1
PFAM: Protein of unknown function UPF0254; KEGG: mfe:Mefer_0370 protein of unknown function UPF0254; Belongs to the UPF0254 family.
     
 0.623
ACX72217.1
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: mja:MJ0693 hypothetical protein.
     
 0.615
ACX72223.1
Hypothetical protein.
       0.523
ACX72327.1
PFAM: protein of unknown function DUF34; KEGG: mja:MJ0927 hypothetical protein.
       0.513
Your Current Organism:
Methanocaldococcus vulcanius
NCBI taxonomy Id: 579137
Other names: M. vulcanius M7, Methanocaldococcus vulcanius M7, Methanocaldococcus vulcanius str. M7, Methanocaldococcus vulcanius strain M7
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