STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACX72376.1KEGG: mfe:Mefer_0095 hypothetical protein. (1046 aa)    
Predicted Functional Partners:
ACX72371.1
PFAM: type II secretion system protein E; KEGG: mfe:Mefer_0090 type II secretion system protein E.
  
    0.729
ACX72375.1
KEGG: mja:MJ1291 hypothetical protein.
       0.563
ACX72372.1
KEGG: mja:MJ1288.1 hypothetical protein.
       0.528
ACX72373.1
KEGG: mja:MJ1289 hypothetical protein.
       0.528
ACX72374.1
KEGG: mja:MJ1290 hypothetical protein.
       0.528
ACX72123.1
PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: mfe:Mefer_0642 CheW protein.
   
    0.484
ACX71970.1
PFAM: type II secretion system protein E; KEGG: mja:MJ0900 type II secretion system protein.
  
    0.466
trmY
Protein of unknown function DUF358; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family.
   
    0.452
ACX72367.1
KEGG: mfe:Mefer_0086 hypothetical protein.
       0.446
ACX72368.1
KEGG: mja:MJ1284 hypothetical protein.
       0.446
Your Current Organism:
Methanocaldococcus vulcanius
NCBI taxonomy Id: 579137
Other names: M. vulcanius M7, Methanocaldococcus vulcanius M7, Methanocaldococcus vulcanius str. M7, Methanocaldococcus vulcanius strain M7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.