Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACX72411.1KEGG: mja:MJ1550 hypothetical protein. (43 aa)    
Predicted Functional Partners:
ACX72409.1
PFAM: Thiolase; KEGG: mja:MJ1549 acetyl-CoA acetyltransferase.
       0.865
ACX72410.1
Hypothetical protein.
       0.712
ACX72412.1
PFAM: RNA-binding protein, predicted; KEGG: mja:MJ1551 hypothetical protein.
       0.659
ACX72408.1
TIGRFAM: hydroxymethylglutaryl-CoA synthase; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; Hydroxymethylglutaryl-coenzyme A synthase domain; KEGG: mja:MJ1546 hypothetical protein; Belongs to the thiolase-like superfamily. UPF0219 family.
       0.605
ACX72413.1
PFAM: protein of unknown function DUF35; KEGG: mfe:Mefer_1486 protein of unknown function DUF35.
       0.433
Your Current Organism:
Methanocaldococcus vulcanius
NCBI taxonomy Id: 579137
Other names: M. vulcanius M7, Methanocaldococcus vulcanius M7, Methanocaldococcus vulcanius str. M7, Methanocaldococcus vulcanius strain M7
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