STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACX72577.1PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: mja:MJ0007 2-hydroxyglutaryl-CoA dehydratase, subunit beta (HgdB). (372 aa)    
Predicted Functional Partners:
ACX72567.1
TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: mja:MJ0004 (R)-2-hydroxyglutaryl-CoA dehydratase activator.
 
 0.985
ACX72178.1
TIGRFAM: methanogenesis marker protein 15; CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: mfe:Mefer_1002 methanogenesis marker protein 15.
 
 
 0.916
ACX71918.1
PFAM: DsrE family protein; SirA family protein; KEGG: mja:MJ0760 hypothetical protein.
 
    0.568
ACX72578.1
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mja:MJ0008 hypothetical protein.
  
    0.558
ACX72482.1
PFAM: SirA family protein; KEGG: mfe:Mefer_1497 SirA family protein.
  
    0.536
ACX72481.1
PFAM: DsrE family protein; KEGG: mja:MJ0989 hypothetical protein.
  
    0.498
ACX72576.1
PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: mae:Maeo_0099 methyl-viologen-reducing hydrogenase delta subunit.
  
    0.474
queE
Radical SAM domain protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
  
    0.450
ACX72579.1
KEGG: mja:MJ0009 hypothetical protein.
  
    0.441
rpl10e
TIGRFAM: ribosomal protein L10.e; PFAM: Ribosomal protein L10e/L16; KEGG: mja:MJ0543 50S ribosomal protein L10e; Belongs to the universal ribosomal protein uL16 family.
  
    0.407
Your Current Organism:
Methanocaldococcus vulcanius
NCBI taxonomy Id: 579137
Other names: M. vulcanius M7, Methanocaldococcus vulcanius M7, Methanocaldococcus vulcanius str. M7, Methanocaldococcus vulcanius strain M7
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