STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACX72679.1PFAM: ATP dependent DNA ligase; KEGG: mja:MJ0414 hypothetical protein. (390 aa)    
Predicted Functional Partners:
ACX73354.1
Protein of unknown function UPF0278; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family.
 
     0.801
ACX73444.1
Brix domain protein; Probably involved in the biogenesis of the ribosome.
 
     0.603
ACX71955.1
KEGG: mja:MJ0885 DNA polymerase B1; PFAM: DNA polymerase B exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B; Hedgehog/intein hint domain protein.
 
    0.584
rtcB
PFAM: protein of unknown function UPF0027; SMART: Hedgehog/intein hint domain protein; KEGG: mja:MJ0682 hypothetical protein; Belongs to the RtcB family.
     
 0.548
ACX73499.1
PFAM: Protein of unknown function DUF166; KEGG: mja:MJ0575 hypothetical protein.
 
     0.529
ACX72493.1
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mja:MJ0722 ferredoxin (FdxA).
  
     0.516
ACX72007.1
PFAM: Protein of unknown function DUF166; KEGG: mja:MJ0838 hypothetical protein.
 
     0.502
ACX72678.1
KEGG: mja:MJ0415 hypothetical protein.
       0.477
ACX72206.1
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mja:MJ0103 hypothetical protein.
  
    0.456
ACX72680.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mja:MJ0413 nitrate transporter protein (NrtB) homolog (CmpB).
       0.453
Your Current Organism:
Methanocaldococcus vulcanius
NCBI taxonomy Id: 579137
Other names: M. vulcanius M7, Methanocaldococcus vulcanius M7, Methanocaldococcus vulcanius str. M7, Methanocaldococcus vulcanius strain M7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.