STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
trmYProtein of unknown function DUF358; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family. (202 aa)    
Predicted Functional Partners:
pus10
THUMP domain protein; Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs.
 
   
 0.921
ACX72123.1
PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: mfe:Mefer_0642 CheW protein.
  
    0.907
ACX72774.1
KEGG: mja:MJ1638 hypothetical protein.
       0.890
cheB
Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
    0.842
truB
rRNA pseudouridine synthase; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.
     
 0.713
ACX71971.1
PFAM: Type II secretion system F domain; KEGG: mja:MJ0901 flagellar assembly protein J.
 
    0.699
ACX73398.1
PFAM: RNA polymerase Rpb4; KEGG: mja:MJ0039 hypothetical protein.
 
     0.681
ACX71962.1
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.
 
    0.675
ACX71963.1
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.
 
    0.663
ACX73399.1
PFAM: Protein of unknown function DUF655; KEGG: mja:MJ0038 hypothetical protein.
 
     0.659
Your Current Organism:
Methanocaldococcus vulcanius
NCBI taxonomy Id: 579137
Other names: M. vulcanius M7, Methanocaldococcus vulcanius M7, Methanocaldococcus vulcanius str. M7, Methanocaldococcus vulcanius strain M7
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