STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACX72938.1PFAM: beta-lactamase domain protein; KEGG: mfe:Mefer_0562 beta-lactamase domain protein. (198 aa)    
Predicted Functional Partners:
ACX73283.1
PFAM: chemotaxis sensory transducer; Rhodanese domain protein; SMART: chemotaxis sensory transducer; Rhodanese domain protein; KEGG: mmp:MMP0413 hypothetical protein.
 
 
 0.767
nth
DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
     
 0.646
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
   
 
 0.641
ACX72786.1
PFAM: regulatory protein LysR; KEGG: mfe:Mefer_0298 transcriptional regulator, LysR family.
 
  
 0.624
ACX73173.1
PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mja:MJ0649 NADH oxidase (nox).
   
 0.621
ACX72937.1
TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: mae:Maeo_1425 molybdenum ABC transporter, periplasmic molybdate-binding protein.
 
   
 0.584
ACX72936.1
TIGRFAM: NifC-like ABC-type porter; molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmp:MMP0506 NifC-like ABC-type porter.
 
    0.512
ACX72864.1
Hypothetical protein.
  
     0.487
ACX73106.1
PFAM: protein of unknown function DUF95 transmembrane; KEGG: mja:MJ0096 hypothetical protein.
   
    0.471
ACX72693.1
PFAM: Mur ligase middle domain protein; KEGG: mfe:Mefer_0369 Mur ligase middle domain protein.
 
  
 0.467
Your Current Organism:
Methanocaldococcus vulcanius
NCBI taxonomy Id: 579137
Other names: M. vulcanius M7, Methanocaldococcus vulcanius M7, Methanocaldococcus vulcanius str. M7, Methanocaldococcus vulcanius strain M7
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