Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACX73032.1PFAM: tRNA pseudouridine synthase D TruD; KEGG: mja:MJ1364 tRNA pseudouridine synthase D. (394 aa)    
Predicted Functional Partners:
ACX73242.1
PFAM: GTP-binding protein HSR1-related; KEGG: mja:MJ1464 GTP-binding protein.
   
 
 0.775
rpl3
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
 
   0.761
rpl24
Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit.
  
   0.742
ACX72668.1
PFAM: THUMP domain protein; KEGG: mfe:Mefer_0032 THUMP domain protein.
 
 
 0.733
rpl15
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
  
   0.727
ACX73393.1
PFAM: phosphoesterase RecJ domain protein; RNA binding S1 domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: mja:MJ1198 hypothetical protein.
  
   0.726
rps2
TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: mfe:Mefer_1409 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
  
   0.721
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
  
   0.720
engB
GTP-binding protein HSR1-releated protein; Necessary for normal cell division and for the maintenance of normal septation.
   
   0.720
rpl13
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.720
Your Current Organism:
Methanocaldococcus vulcanius
NCBI taxonomy Id: 579137
Other names: M. vulcanius M7, Methanocaldococcus vulcanius M7, Methanocaldococcus vulcanius str. M7, Methanocaldococcus vulcanius strain M7
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