STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACX73130.1Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mja:MJ0586 hypothetical protein. (161 aa)    
Predicted Functional Partners:
rpl18e
PFAM: ribosomal protein L15; KEGG: mfe:Mefer_0486 ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL18 family.
 
   0.933
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: mja:MJ0980 30S ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 
 0.918
rps3
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
 
 
 0.915
rpl40e
KEGG: mfe:Mefer_1082 hypothetical protein; Belongs to the eukaryotic ribosomal protein eL40 family.
  
   0.912
rps28e
PFAM: Ribosomal protein S28e; KEGG: mja:MJ1202 30S ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family.
  
   0.898
rpl29
TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: mja:MJ0462 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
 0.894
rpl24e
Ribosomal protein L24E; Binds to the 23S rRNA.
  
   0.894
rpl15e
PFAM: Ribosomal protein L15e; KEGG: mja:MJ0983 50S ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.
  
 
 0.884
rps19p
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
  
   0.884
tbp
TATA-box binding family protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
  
 
 
 0.881
Your Current Organism:
Methanocaldococcus vulcanius
NCBI taxonomy Id: 579137
Other names: M. vulcanius M7, Methanocaldococcus vulcanius M7, Methanocaldococcus vulcanius str. M7, Methanocaldococcus vulcanius strain M7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.