Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rps27ePFAM: Ribosomal protein S27E; KEGG: mfe:Mefer_0429 ribosomal protein S27E. (61 aa)    
Predicted Functional Partners:
rpl44e
Ribosomal protein L44E; Binds to the 23S rRNA.
  
 
 0.998
rps17e
KEGG: mja:MJ0245 30S ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family.
 
 
 0.996
rpl40e
KEGG: mfe:Mefer_1082 hypothetical protein; Belongs to the eukaryotic ribosomal protein eL40 family.
   
 
 0.994
rpl15e
PFAM: Ribosomal protein L15e; KEGG: mja:MJ0983 50S ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.
   
 
 0.993
rps24e
PFAM: Ribosomal protein S24e; KEGG: mja:MJ0394 30S ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 
 0.993
ACX72096.1
PFAM: Protein of unknown function DUF1610; KEGG: mja:MJ0458.1 hypothetical protein.
  
   0.989
rpl18e
PFAM: ribosomal protein L15; KEGG: mfe:Mefer_0486 ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL18 family.
  
 
 0.989
rpl4
50S ribosomal protein L4P; Forms part of the polypeptide exit tunnel.
 
   0.983
rpl31e
PFAM: Ribosomal protein L31e; KEGG: mja:MJ0049 50S ribosomal protein L31e; Belongs to the ribosomal protein L31e family.
 
 
 0.981
rpl21e
PFAM: Ribosomal protein L21e; KEGG: mja:MJ0040 50S ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
  
 
 0.979
Your Current Organism:
Methanocaldococcus vulcanius
NCBI taxonomy Id: 579137
Other names: M. vulcanius M7, Methanocaldococcus vulcanius M7, Methanocaldococcus vulcanius str. M7, Methanocaldococcus vulcanius strain M7
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