STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACX73560.1PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mfe:Mefer_1094 radical SAM domain protein. (320 aa)    
Predicted Functional Partners:
gatA
glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
     
 0.766
ACX73060.1
PFAM: protein of unknown function DUF521; KEGG: mfe:Mefer_1421 protein of unknown function DUF521.
       0.701
ACX73058.1
KEGG: mfe:Mefer_1419 GTPase or GTP-binding protein-like protein.
 
     0.678
cobD
Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
       0.632
ACX73057.1
PFAM: Protein of unknown function DUF504; KEGG: mfe:Mefer_1418 protein of unknown function DUF504; Belongs to the UPF0248 family.
       0.620
ACX73559.1
PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; KEGG: mja:MJ1311 hypothetical protein.
       0.603
ACX72799.1
PFAM: protein of unknown function DUF364; KEGG: mja:MJ0500 hypothetical protein.
 
     0.555
pcm
protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
  
  
 0.515
ACX73558.1
PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: mja:MJ1310 putative monovalent cation/H+ antiporter subunit C.
 
     0.443
ACX73562.1
KEGG: mja:MJ1161 hypothetical protein.
       0.443
Your Current Organism:
Methanocaldococcus vulcanius
NCBI taxonomy Id: 579137
Other names: M. vulcanius M7, Methanocaldococcus vulcanius M7, Methanocaldococcus vulcanius str. M7, Methanocaldococcus vulcanius strain M7
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