STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI37301.1Hopanoid-associated sugar epimerase; KEGG: bmj:BMULJ_05269 dihydroflavonol-4-reductase; TIGRFAM: hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein. (337 aa)    
Predicted Functional Partners:
AEI37296.1
TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; KEGG: bcm:Bcenmc03_4556 squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase.
 
 
 0.970
AEI37300.1
KEGG: bmj:BMULJ_05271 putative glycosyltransferase; TIGRFAM: hopene-associated glycosyltransferase HpnB; PFAM: glycosyl transferase family 2.
 
   0.958
AEI37298.1
TIGRFAM: squalene synthase HpnD; KEGG: bxe:Bxe_B0010 putative squalene/phytoene synthase; PFAM: Squalene/phytoene synthase.
 
   0.919
AEI37299.1
Squalene synthase HpnC; KEGG: rhi:NGR234_004 Y4aD; TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase.
 
   0.918
AEI37295.1
Hopanoid-associated phosphorylase; KEGG: reu:Reut_B4955 hypothetical protein; TIGRFAM: hopanoid-associated phosphorylase; PFAM: purine or other phosphorylase family 1.
 
     0.887
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.854
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
  0.853
AEI37297.1
KEGG: rhi:NGR234_002 Y4aB; TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase.
 
  
 0.852
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.848
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
  0.847
Your Current Organism:
Zymomonas mobilis pomaceae
NCBI taxonomy Id: 579138
Other names: Z. mobilis subsp. pomaceae ATCC 29192, Zymomonas mobilis subsp. pomaceae ATCC 29192, Zymomonas mobilis subsp. pomaceae str. ATCC 29192, Zymomonas mobilis subsp. pomaceae strain ATCC 29192
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