STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS85137.1TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: eca:ECA1408 formate dehydrogenase, nitrate-inducible, major subunit. (1015 aa)    
Predicted Functional Partners:
ACS85135.1
TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: eca:ECA1406 formate dehydrogenase-N subunit gamma.
 
 
 0.978
ACS85136.1
Formate dehydrogenase, beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
 
 
 0.973
ACS86294.1
TIGRFAM: formate dehydrogenase, gamma subunit; PFAM: cytochrome B561; KEGG: spe:Spro_0086 formate dehydrogenase-O subunit gamma.
 
 
 0.912
ACS86295.1
Formate dehydrogenase, beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
 
 
 0.892
fdhE
Formate dehydrogenase accessory protein FdhE; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
 
 
 
 0.872
ACS86309.1
PFAM: Polysulphide reductase NrfD; KEGG: yen:YE3607 putative hydrogenase 2 b cytochrome subunit.
  
 
 0.752
ACS86310.1
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eum:ECUMN_3480 hydrogenase 2 4Fe-4S ferredoxin-type component.
 
 
 0.739
ACS85170.1
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA0914 putative component of polysulfide reductase.
 
 
 0.726
ACS84104.1
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pmr:PMI0070 oxidoreductase, Fe-S subunit.
 
 
 0.722
ACS86039.1
TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: esa:ESA_01745 hypothetical protein.
 
 
 0.720
Your Current Organism:
Dickeya paradisiaca
NCBI taxonomy Id: 579405
Other names: D. paradisiaca Ech703, Dickeya dadantii Ech703, Dickeya paradisiaca Ech703
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