STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS85178.1PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_0639 major facilitator transporter. (439 aa)    
Predicted Functional Partners:
ACS85179.1
KEGG: rpc:RPC_0632 MetA-pathway phenol degradation-like protein.
  
    0.589
ACS85174.1
PFAM: protein of unknown function DUF849; KEGG: rpc:RPC_0635 hypothetical protein.
 
     0.585
ACS85175.1
KEGG: rpc:RPC_0636 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
    0.459
ACS85176.1
KEGG: rpc:RPC_0637 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.
       0.455
ACS85177.1
3-oxoacid CoA-transferase; PFAM: coenzyme A transferase; KEGG: rpc:RPC_0638 3-oxoacid CoA-transferase.
       0.455
ACS85172.1
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpc:RPC_0631 enoyl-CoA hydratase/isomerase.
 
     0.411
Your Current Organism:
Dickeya paradisiaca
NCBI taxonomy Id: 579405
Other names: D. paradisiaca Ech703, Dickeya dadantii Ech703, Dickeya paradisiaca Ech703
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