Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACS85715.1KEGG: eca:ECA2287 hypothetical protein. (88 aa)    
Predicted Functional Partners:
ACS85404.1
PFAM: protein of unknown function UPF0227; KEGG: esa:ESA_02236 hypothetical protein; Belongs to the UPF0227 family.
  
     0.772
ACS84629.1
PFAM: protein of unknown function DUF1107; KEGG: eca:ECA3599 hypothetical protein.
  
     0.770
ACS84937.1
KEGG: eca:ECA1344 hypothetical protein.
  
     0.767
ACS86334.1
PFAM: YfbU family protein; KEGG: eca:ECA3037 hypothetical protein; Belongs to the UPF0304 family.
  
     0.747
ACS84738.1
PFAM: protein of unknown function DUF1100 hydrolase family protein; KEGG: eca:ECA3465 fermentation/respiration switch protein; Belongs to the UPF0255 family.
  
     0.745
crl
Transcriptional regulator Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.740
ACS84956.1
TIGRFAM: cyd operon protein YbgE; KEGG: eca:ECA1368 hypothetical protein.
  
     0.723
viaA
PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: eca:ECA0004 hypothetical protein.
  
     0.714
ACS84610.1
PFAM: Opacity-associated protein A; Opacity-associated protein A domain protein; KEGG: eca:ECA3608 hypothetical protein.
  
     0.705
ACS87538.1
PFAM: protein of unknown function DUF1422; KEGG: eca:ECA4240 hypothetical protein.
  
     0.702
Your Current Organism:
Dickeya paradisiaca
NCBI taxonomy Id: 579405
Other names: D. paradisiaca Ech703, Dickeya dadantii Ech703, Dickeya paradisiaca Ech703
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