STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS86736.1Transcriptional antiterminator, Rof; PFAM: Modulator of Rho-dependent transcription termination; KEGG: eca:ECA1050 Rho-binding antiterminator. (86 aa)    
Predicted Functional Partners:
ACS86735.1
PFAM: protein of unknown function UPF0253; KEGG: spe:Spro_3762 hypothetical protein; Belongs to the UPF0253 family.
 
  
 0.851
ACS85003.1
PFAM: AsmA family protein; KEGG: eca:ECA1413 putative assembly protein.
 
     0.784
lpoB
Membrane lipoprotein lipid attachment site; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b). Belongs to the LpoB family.
  
   
 0.784
rcsD
Hpt sensor signal transduction histidine kinase; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.
  
     0.772
ACS86469.1
PFAM: UvrD/REP helicase; KEGG: eca:ECA1756 DNA helicase IV.
  
   
 0.771
ACS85693.1
PFAM: protein of unknown function DUF945; KEGG: eca:ECA2264 hypothetical protein.
  
     0.770
ACS87228.1
KEGG: eca:ECA0466 hypothetical protein.
  
     0.767
ACS85434.1
PFAM: porin Gram-negative type; KEGG: eca:ECA2542 outer membrane protein.
  
     0.765
ACS85433.1
PFAM: porin Gram-negative type; KEGG: eca:ECA2542 outer membrane protein.
  
     0.762
ACS87086.1
DNA polymerase III psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.761
Your Current Organism:
Dickeya paradisiaca
NCBI taxonomy Id: 579405
Other names: D. paradisiaca Ech703, Dickeya dadantii Ech703, Dickeya paradisiaca Ech703
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