STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS86778.1MltA domain protein; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division. (371 aa)    
Predicted Functional Partners:
matP
Protein of unknown function DUF1047; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain.
  
     0.664
ACS86334.1
PFAM: YfbU family protein; KEGG: eca:ECA3037 hypothetical protein; Belongs to the UPF0304 family.
  
     0.596
ACS84738.1
PFAM: protein of unknown function DUF1100 hydrolase family protein; KEGG: eca:ECA3465 fermentation/respiration switch protein; Belongs to the UPF0255 family.
 
     0.549
trpR
Trp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region.
  
     0.539
ACS87538.1
PFAM: protein of unknown function DUF1422; KEGG: eca:ECA4240 hypothetical protein.
  
     0.507
ACS86797.1
KEGG: eca:ECA0979 hypothetical protein.
  
     0.488
ACS87118.1
KEGG: eca:ECA0694 D-alanyl-D-alanine carboxypeptidase/endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C.
  
   
 0.475
mukE
Chromosome segregation and condensation protein MukE; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF.
  
     0.454
mukF
Chromosome segregation and condensation protein MukF; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity.
  
     0.452
ACS86475.1
PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: eca:ECA1751 outer membrane protein A; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
   
 0.438
Your Current Organism:
Dickeya paradisiaca
NCBI taxonomy Id: 579405
Other names: D. paradisiaca Ech703, Dickeya dadantii Ech703, Dickeya paradisiaca Ech703
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