Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001266615_04188 | nikR | GCA_001266615_04188 | GCA_001266615_00972 | Unannotated protein. | Unannotated protein; Transcriptional repressor of the nikABCDE operon. Is active in the presence of excessive concentrations of intracellular nickel. | 0.923 |
gsiA_16 | gsiA_17 | GCA_001266615_00971 | GCA_001266615_00970 | Unannotated protein. | Unannotated protein; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family. | 0.998 |
gsiA_16 | nikA | GCA_001266615_00971 | GCA_001266615_00967 | Unannotated protein. | Unannotated protein. | 0.999 |
gsiA_16 | nikB | GCA_001266615_00971 | GCA_001266615_00968 | Unannotated protein. | Unannotated protein. | 0.999 |
gsiA_16 | nikC | GCA_001266615_00971 | GCA_001266615_00969 | Unannotated protein. | Unannotated protein. | 0.999 |
gsiA_16 | nikR | GCA_001266615_00971 | GCA_001266615_00972 | Unannotated protein. | Unannotated protein; Transcriptional repressor of the nikABCDE operon. Is active in the presence of excessive concentrations of intracellular nickel. | 0.834 |
gsiA_16 | rstA | GCA_001266615_00971 | GCA_001266615_00973 | Unannotated protein. | Unannotated protein. | 0.578 |
gsiA_16 | ydgC | GCA_001266615_00971 | GCA_001266615_00966 | Unannotated protein. | Unannotated protein. | 0.541 |
gsiA_17 | gsiA_16 | GCA_001266615_00970 | GCA_001266615_00971 | Unannotated protein; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family. | Unannotated protein. | 0.998 |
gsiA_17 | nikA | GCA_001266615_00970 | GCA_001266615_00967 | Unannotated protein; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family. | Unannotated protein. | 0.999 |
gsiA_17 | nikB | GCA_001266615_00970 | GCA_001266615_00968 | Unannotated protein; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family. | Unannotated protein. | 0.999 |
gsiA_17 | nikC | GCA_001266615_00970 | GCA_001266615_00969 | Unannotated protein; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family. | Unannotated protein. | 0.999 |
gsiA_17 | nikR | GCA_001266615_00970 | GCA_001266615_00972 | Unannotated protein; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family. | Unannotated protein; Transcriptional repressor of the nikABCDE operon. Is active in the presence of excessive concentrations of intracellular nickel. | 0.847 |
gsiA_17 | rstA | GCA_001266615_00970 | GCA_001266615_00973 | Unannotated protein; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family. | Unannotated protein. | 0.578 |
gsiA_17 | ydgC | GCA_001266615_00970 | GCA_001266615_00966 | Unannotated protein; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family. | Unannotated protein. | 0.541 |
hypB | nikR | GCA_001266615_03434 | GCA_001266615_00972 | Unannotated protein. | Unannotated protein; Transcriptional repressor of the nikABCDE operon. Is active in the presence of excessive concentrations of intracellular nickel. | 0.534 |
hypB | porA | GCA_001266615_03434 | GCA_001266615_00070 | Unannotated protein. | Unannotated protein. | 0.540 |
nikA | gsiA_16 | GCA_001266615_00967 | GCA_001266615_00971 | Unannotated protein. | Unannotated protein. | 0.999 |
nikA | gsiA_17 | GCA_001266615_00967 | GCA_001266615_00970 | Unannotated protein. | Unannotated protein; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family. | 0.999 |
nikA | nikB | GCA_001266615_00967 | GCA_001266615_00968 | Unannotated protein. | Unannotated protein. | 0.999 |
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